We present a declarative implementation in Constraint Logic Programming of the Protein Folding Problem, for models based on Face-Centered Cubes. Constraints are either used to encode the problem as a minimization problem or to prune the search space. In particular, we introduce constraints using secondary structure information
Protein Folding in CLP(FD) with Empirical Contact Energies / DAL PALU', Alessandro; And, ; AGOSTINO DOVIER, And; Federico, Fogolari. - 3010:(2004), pp. 250-265. (Intervento presentato al convegno Joint ERCIM/CoLogNET International Workshop on Constraint Solving and Constraint Logic Programming tenutosi a Budapest, Hungary nel 30 June - 2 July, 2003) [10.1007/978-3-540-24662-6_14].
Protein Folding in CLP(FD) with Empirical Contact Energies
DAL PALU', Alessandro;
2004-01-01
Abstract
We present a declarative implementation in Constraint Logic Programming of the Protein Folding Problem, for models based on Face-Centered Cubes. Constraints are either used to encode the problem as a minimization problem or to prune the search space. In particular, we introduce constraints using secondary structure informationI documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
